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Resolved by Downloading the IIS 6 resource kit.
http://download.microsoft.com/download/7/8/2/782c25d3-0f90-4619-ba36-f0d8f351d398/iis60rkt.exe

With the IIS Metabase Explorer, go to the Server name,  Expand LM,  Go to W3SVC.   Find event CGI Timeout and change the
default from 300 secs to whatever you need and it works.

With IIS5.0 this was built into the IIS Manager but this is not part of the standard config in IIS6. This is an accepted fix.

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